Sundararajan M, Rathinam SR, Thundikandy R, Kanakath A, Balamurugan S, Vedhanayaki R, D Miller C, Lim LL, Suhler EB, Al-Dhibi HA et al..  2025.  Association Between Baseline Macular Morphologic Features on Optical Coherence Tomography and Visual Outcomes in Patients with Vogt-Koyanagi-Harada Disease.. Ocul Immunol Inflamm. 33(2):263-270.

Benador-Shen C, Shantha J, Lee J, Qian Y, Doan T, Gonzales JA.  2025.  Multiple Anterior Chamber Paracenteses May Be Needed to Identify Cytomegalovirus Anterior Uveitis.. Am J Ophthalmol. 269:189-194.

Benador-Shen C, Shantha J, Lee J, Qian Y, Doan T, Gonzales JA.  2025.  Reply to Comment on "Multiple Anterior Chamber Paracenteses May be Needed to Identify Cytomegalovirus Anterior Uveitis.".. Am J Ophthalmol. 

Vazquez SE, Niemeyer K, Mentreddy A, Gonzales J, Rasool N, Acharya NR, Doan T, Shantha JG.  2024.  Acute neuroretinitis as a delayed manifestation of tubulointerstitial nephritis and uveitis syndrome.. Am J Ophthalmol Case Rep. 34:102050.

Peterson B, Arzika AM, Amza A, Maliki R, Karamba AMankara, Moussa M, Kemago M, Liu Z, Houpt E, Liu J et al..  2024.  Assessment of spillover of antimicrobial resistance to untreated children 7 to 12 years old after mass drug administration of azithromycin for child survival in Niger: a secondary analysis of the MORDOR cluster-randomized trial.. Clin Infect Dis. 

Yan D, N Prajna V, Lalitha P, Sansanayudh W, Satitpitakul V, Laovirojjanakul W, Chaudhary M, Bountogo M, Sie A, Coulibaly B et al..  2024.  Association of weather variables with pathogens contributing to conjunctivitis worldwide.. Clin Infect Dis. 

O'Brien KS, Arzika AM, Amza A, Maliki R, Aichatou B, Bello IMamane, Beidi D, Galo N, Harouna N, Karamba AM et al..  2024.  Azithromycin to Reduce Mortality - An Adaptive Cluster-Randomized Trial.. N Engl J Med. 391(8):699-709.

Seitzman GD, Prajna L, N Prajna V, Sansanayudh W, Satitpitakul V, Laovirojjanakul W, Chen C, Zhong L, Ouimette K, Redd T et al..  2024.  Biomarker Detection and Validation for Corneal Involvement in Patients With Acute Infectious Conjunctivitis.. JAMA Ophthalmol. 

Manoharan-Basil SSanthini, Gestels Z, Abdelatti S, De Baetselier I, Vanbaelen T, Hinterwirth A, Doan T, Lietman T, Kenyon C.  2024.  Could the effect of antimicrobials on antimicrobial resistance be saturated at high-antimicrobial consumption? A comparison of the MORDOR and ResistAZM studies. Int J Infect Dis. 145:107082.

Tran H, H? T, Hoang L, Tran Y, Ruder K, Zhong L, Chen C, Liu YH, Yu D, Abraham T et al..  2024.  Coxsackievirus A24 Causing Acute Conjunctivitis in a 2023 outbreak in Vietnam.. Int J Infect Dis. :107133.

Choo C, Cote O, Bostwick K, Regueiro M, Wells J, Grossniklaus HE, Gonzales J, Yeh S, Hinterwirth A, Doan T et al..  2024.  Deep sequencing as a diagnostic tool in patients with suspected primary vitreoretinal lymphoma.. Br J Ophthalmol. 

Kalua K, Misanjo ES, Lietman TM, Ruder K, Zhong L, Chen C, Liu YH, Yu D, Abraham T, Wu N et al..  2024.  Etiologies of Infectious Keratitis in Malawi.. Am J Trop Med Hyg. 

Doan T, Liu Z, Sie A, Dah C, Bountogo M, Ouattara M, Coulibaly B, Kiemde D, Zonou G, Nebie E et al..  2024.  Gut Microbiome Diversity and Antimicrobial Resistance After a Single Dose of Oral Azithromycin in Children: A Randomized Placebo-Controlled Trial.. Am J Trop Med Hyg. 

Seitzman GD, Keenan JD, Lietman TM, Ruder K, Zhong L, Chen C, Liu YH, Yu D, Abraham T, Hinterwirth A et al..  2024.  Human Conjunctival Transcriptome in Acanthamoeba Keratitis: An Exploratory Study.. Cornea. 

Oldenburg CE, Ouattara M, Bountogo M, Boudo V, Ouedraogo T, Compaoré G, Dah C, Zakane A, Coulibaly B, Bagagnan C et al..  2024.  Mass Azithromycin Distribution to Prevent Child Mortality in Burkina Faso: The CHAT Randomized Clinical Trial.. JAMA. 331(6):482-490.

Bountogo M, Ouermi L, Dah C, Sie A, Coulibaly B, Zakane A, Ouedraogo T, Ouattara M, Lebas E, Fetterman I et al..  2024.  Neonatal Azithromycin Exposure and Childhood Growth: Long-Term Follow-Up of a Randomized Controlled Trial.. Am J Trop Med Hyg. 

Nguyen M, Doan T, Seitzman GD.  2024.  Ocular manifestations of mpox.. Curr Opin Ophthalmol. 

Sitoe HMior, Oswald WE, Zita F, Fall M, Momade T, Adams MW, Flueckiger RM, McPherson S, Eyob S, Doan T et al..  2024.  Ongoing transmission of trachoma in low prevalence districts in Mozambique: results from four cross-sectional enhanced impact surveys, 2022.. Sci Rep. 14(1):22842.

Acharya NR, Rathinam SR, Thundikandy R, Kanakath A, Balamurugan S, Vedhanayaki R, Gonzales JA, Lim LL, Suhler EB, Al-Dhibi HA et al..  2024.  Outcomes in Patients with Vogt-Koyanagi-Harada Disease from the First-line Antimetabolites for Steroid-sparing Treatment Uveitis Trial.. Am J Ophthalmol. 

Arzika AM, Abdou A, Maliki R, Beido N, Kadri B, Harouna AN, Galo AN, Alio MK, Lebas E, Oldenburg CE et al..  2024.  Prolonged mass azithromycin distributions and macrolide resistance determinants among preschool children in Niger: A sub-study of a cluster-randomized trial (MORDOR).. PLoS Med. 21(5):e1004386.

Amza A, Kadri B, Nassirou B, Arzika A, Gebreegziabher E, Hu H, Zhong L, Chen C, Yu D, Abraham T et al..  2024.  Seroepidemiology of trachoma in a low prevalence region receiving annual mass azithromycin distribution in Maradi, Niger.. PLoS Negl Trop Dis. 18(12):e0012727.

Deiner MS, Deiner NA, Hristidis V, McLeod SD, Doan T, Lietman TM, Porco TC.  2024.  Use of Large Language Models to Assess the Likelihood of Epidemics From the Content of Tweets: Infodemiology Study.. J Med Internet Res. 26:e49139.

Prajna NVenkatesh, Prajna L, Teja V, Gunasekaran R, Ruder K, Zhong L, Yu D, Liu D, Abraham T, Ao W et al..  2023.  Apollo Rising: Acute Conjunctivitis Outbreak in India, 2022. Cornea Open. (2)

Kaidonis G, Lamy R, Wu J, Yang D, Psaras C, Doan T, Stewart JM.  2023.  Aqueous Fluid Transcriptome Profiling Differentiates Between Non-Neovascular and Neovascular AMD.. Invest Ophthalmol Vis Sci. 64(10):26.

Chattopadhyay A, Rathinam SR, Gonzales JA, Kelly NK, Thundikandy R, Kanakath A, S Murugan B, Vedhanayaki R, Lim LL, Suhler EB et al..  2023.  Association between Quality of Life and Visual Acuity in a Randomized Clinical Trial of Patients with Uveitis Taking Antimetabolites.. Ocul Immunol Inflamm. :1-9.

Kanai K, Whiteside M, Wong M, La T, Nassiri M, Lee S, Yeung SKei, Coulter A, Ruder K, Chen C et al..  2023.  Case Series: Unbiased Deep Sequencing Analysis of Acute Infectious Conjunctivitis in an Ambulatory Eye Center in Berkeley, California.. Optom Vis Sci. 

Amza A, Nassirou B, Kadri B, Ali S, Mariama B, Ibrahim CMamadou, Roufaye LAboubacar, Lebas E, Colby E, Zhong L et al..  2023.  Comprehensive Profile of Pathogens and Antimicrobial Resistance in Conjunctivitis Cases from Niger.. Am J Trop Med Hyg. 109(6):1333-1338.

Nguyen MT, Mentreddy A, Schallhorn J, Chan M, Aung S, Doernberg SB, Babik J, Miles K, Yang K, Lydon E et al..  2023.  Isolated Ocular Mpox without Skin Lesions, United States.. Emerg Infect Dis. 29(6):1285-1288.

M Vagefi R, Idowu OO, Miller A, Doan T, Chen C, Hinterwirth A, Zhong L, Ahmad M, Ashraf DC, Grob SR et al..  2023.  Metagenomic Deep Sequencing for Orbital Inflammatory Disease.. Ocul Immunol Inflamm. :1-4.

Tran H, Hoang L, Tran Y, H? T, Ruder K, Zhong L, Chen C, Yu D, Liu YH, Abraham T et al..  2023.  Pathogen Profiles of Infectious Conjunctivitis in Ho Chi Minh City, Vietnam.. Cornea Open. 2(4)

Tsui E, Sella R, Tham V, Kong AW, McClean E, Goren L, Bahar I, Cherian N, Ramirez J, Hughes RE et al..  2023.  Pathogen Surveillance for Acute Infectious Conjunctivitis.. JAMA Ophthalmol. 

Sura AA, Sun Y, Reddy AK, Rathinam SR, Gonzales JA, Thundikandy R, Vedhanayaki R, Kanakath A, Murugan B, Doan TA et al..  2023.  Reduced Dose Methotrexate and Mycophenolate Mofetil in Noninfectious Uveitis: A Sub-Analysis from the First-Line Antimetabolites as Steroid Sparing Therapy (FAST) Trial.. Ocul Immunol Inflamm. :1-6.

Reddy AK, D Miller C, Sura AA, Rathinam SR, Gonzales JA, Thundikandy R, Kanakath A, Murugan B, Vedhanayaki R, Lim LL et al..  2023.  Risk of failing both methotrexate and mycophenolate mofetil from the First-line Antimetabolites as Steroid-sparing Treatment (FAST) uveitis trial.. J Ophthalmic Inflamm Infect. 13(1):29.

Hazel A, Arzika AM, Abdou A, Lebas E, Porco TC, Maliki R, Doan T, Lietman TM, Keenan JD, Blumberg S.  2023.  Temporal Trends in Phenotypic Macrolide and Nonmacrolide Resistance for Streptococcus pneumoniae Nasopharyngeal Samples Up to 36 Months after Mass Azithromycin Administration in a Cluster-Randomized Trial in Niger.. Am J Trop Med Hyg. 

Gould CV, Free RJ, Bhatnagar J, Soto RA, Royer TL, Maley WR, Moss S, Berk MA, Craig-Shapiro R, Kodiyanplakkal RPriya L et al..  2023.  Transmission of yellow fever vaccine virus through blood transfusion and organ transplantation in the USA in 2021: report of an investigation. The Lancet Microbe. 

Johnson K, Taleo F, Willie K, Amel E, Nanu M, Alguet M, Wass J, Rymill P, Solomon A, Ruder K et al..  2023.  Viruses Associated with Acute Conjunctivitis in Vanuatu.. Am J Trop Med Hyg. 

Ousmane S, Kollo IA, Jambou R, Boubacar R, Arzika AM, Maliki R, Amza A, Liu Z, Lebas E, Colby E et al..  2023.  Wastewater-Based Surveillance of Antimicrobial Resistance in Niger: An Exploratory Study.. Am J Trop Med Hyg. 

Shantha J, Reddy AK, Sura A, Tsang A, Moussa K, Acharya N, Gonzales J, Doan T.  2022.  Bilateral anterior and intermediate uveitis in SARS-CoV-2 associated multisystem inflammatory syndrome in a pediatric patient.. Pediatr Rheumatol Online J. 20(1):59.

Zhao M, Ma P, Xie Q, Bui A, Yonamine S, Hinterwirth A, Zhong L, Chen C, Doan T, Han Y.  2022.  Biomarkers for primary open-angle glaucoma progression.. Exp Eye Res. :109025.

Goodman CF, Doan T, Mehra D, Betz J, Locatelli E, Mangwani-Mordani S, Kalahasty K, Hernandez M, Hwang J, Galor A.  2022.  Case-Control Study Examining the Composition of the Gut Microbiome in Individuals With and Without Immune-Mediated Dry Eye.. Cornea. 

Mosenia A, Chin SA, Alemayehu W, Melese M, Lakew T, Zhou Z, Doan T, Cevallos V, Lietman TM, Keenan JD.  2022.  Concordance of ompA types in children re-infected with ocular Chlamydia trachomatis following mass azithromycin treatment for trachoma.. PLoS Negl Trop Dis. 16(3):e0010237.

Bountogo M, Sie A, Coulibaly B, Ruder K, Chen C, Zhong L, Colby E, Lebas E, Deiner M, Hinterwirth A et al..  2022.  Deep sequencing analysis of acute conjunctivitis in Burkina Faso, Africa.. Int Health. 

Lalitha P, N Prajna V, Gunasekaran R, Teja GVishnu, Sharma SS, Hinterwirth A, Ruder K, Zhong L, Chen C, Deiner M et al..  2022.  Deep sequencing analysis of clinical samples from patients with acute infectious conjunctivitis during the COVID-19 delta surge in Madurai, India.. J Clin Virol. 157:105318.

Gonzales JA, Sundararajan M, Qian Y, Hwang T, Doan T.  2022.  Detection of Leptospirosis Genome from the Aqueous Humor of a Patient with Bilateral Uveitis.. Ocul Immunol Inflamm. :1-3.

Arzika AM, Maliki R, E Goodhew B, Rogier E, Priest JW, Lebas E, O'Brien KS, Le V, Oldenburg CE, Doan T et al..  2022.  Effect of biannual azithromycin distribution on antibody responses to malaria, bacterial, and protozoan pathogens in Niger.. Nat Commun. 13(1):976.

Coulibaly B, Kiemde D, Zonou G, Sie A, Dah C, Bountogo M, Brogdon J, Hu H, Lebas E, Porco TC et al..  2022.  Effect of Single-dose Azithromycin on Pneumococcal Carriage and Resistance: A Randomized Controlled Trial.. Pediatr Infect Dis J. 41(9):728-730.

Oldenburg CE, Hinterwirth A, Dah C, Millogo O, Coulibaly B, Ouédraogo M, Sie A, Chen C, Zhong L, Ruder K et al..  2022.  Gut Microbiome among Children with Uncomplicated Severe Acute Malnutrition in a Randomized Controlled Trial of Azithromycin versus Amoxicillin.. Am J Trop Med Hyg. 

Oldenburg CE, Hinterwirth A, Ourohiré M, Dah C, Ouédraogo M, Sie A, Boudo V, Chen C, Ruder K, Zhong L et al..  2022.  Gut Resistome after Antibiotics among Children with Uncomplicated Severe Acute Malnutrition: A Randomized Controlled Trial.. Am J Trop Med Hyg. 107(1):59-64.

Redd TK, Lalitha P, N Prajna V, Sikha M, Gunasekaran R, Hinterwirth A, Chen C, Zhong L, Liu Z, Lietman TM et al..  2022.  Impact of Sample Collection Order on the Diagnostic Performance of Metagenomic Deep Sequencing for Infectious Keratitis.. Cornea. 41(1):39-44.

Huang CH, Sahoo MK, Verghese M, Sibai M, Solis D, Mfuh KO, Kurzer J, Hogan CA, Doan TA, Pinsky BA.  2022.  Interepidemic Respiratory Syncytial Virus during the COVID-19 Pandemic.. Microbiol Spectr. :e0094722.

Gonzales JA, Nortey J, Reddy A, Doan T, Acharya NR.  2022.  Intraocular Inflammation Associated with IRAK4 Deficiency.. Ocul Immunol Inflamm. :1-3.

Oldenburg CE, Sie A, Bountogo M, Zakane A, Compaoré G, Ouedraogo T, Koueta F, Lebas E, Brogdon J, Nyatigo F et al..  2022.  Neonatal azithromycin administration for prevention of infant mortality.. NEJM Evid. 1(4):EVIDoa2100054.

Sura AA, Reddy AK, Babic K, Saifee M, Acharya NR, Gonzales JA, Han Y, Doan TA.  2022.  Occult cause of uveitis-glaucoma-hyphema syndrome diagnosed during treatment with endocyclophotocoagulation (ECP).. Am J Ophthalmol Case Rep. 26:101537.

Mahmud H, Keenan JD, Gonzales J, Schallhorn J, Chan M, Arnold B, Cavallino V, Lietman TM, Doan T, Seitzman GD.  2022.  Ocular Rosacea microBiome Study (ORBS)-sub-microbial versus antibiotic dosing of doxycycline versus placebo in treatment of symptomatic ocular rosacea: study protocol for a parallel-arm randomized clinical trial.. Trials. 23(1):1033.

Tsui E, Rathinam SR, Gonzales JA, Thundikandy R, Kanakath A, Balamurugan S, Vedhanayaki R, Lim LL, Suhler EB, Al-Dhibi HA et al..  2022.  Outcomes of uveitic macular edema in the First-line Antimetabolites as Steroid-sparing Treatment (FAST) Uveitis Trial.. Ophthalmology. 

N Prajna V, Lalitha P, Teja GVishnu, Gunasekaran R, Sharma SS, Hinterwirth A, Ruder K, Zhong L, Chen C, Deiner M et al..  2022.  Outpatient human coronavirus associated conjunctivitis in India.. J Clin Virol. 157:105300.

Rose-Nussbaumer J, Doan T.  2022.  Role of Ophthalmology in Emerging Infectious Diseases.. JAMA Ophthalmol. 

Bui AD, Kong CL, Kelly NK, Rathinam SR, Gonzales JA, Thundikandy R, Kanakath A, Murugan B, Vedhanayaki R, Lim LL et al..  2022.  Time to Uveitis Control with Methotrexate and Mycophenolate Mofetil.. Ophthalmology. 

Costales C, Sahoo MK, Huang CH, Guimaraes CV, Born D, Kushner L, Gans HA, Doan TA, Pinsky BA.  2022.  Vaccine-Associated Measles Encephalitis in Immunocompromised Child, California, USA.. Emerg Infect Dis. 28(4):906-908.

Greenwald MF, Redd TK, Doan T, McLeod SD, Seitzman GD.  2022.  Very late onset LASIK flap Acremonium fungal keratitis confirmed by metagenomic deep sequencing.. Am J Ophthalmol Case Rep. 25:101294.

N Prajna V, Lalitha P, Chen C, Zhong L, Lietman TM, Doan T, Seitzman GD.  2021.  Acute Keratoconjunctivitis Resulting From Coinfection With Avian Newcastle Virus and Human Adenovirus.. Cornea. 

O'Brien KS, Arzika AM, Amza A, Maliki R, Ousmane S, Kadri B, Nassirou B, Mankara AKaramba, Harouna ANaser, Colby E et al..  2021.  Age-based targeting of biannual azithromycin distribution for child survival in Niger: an adaptive cluster-randomized trial protocol (AVENIR).. BMC Public Health. 21(1):822.

Sundararajan M, Schallhorn JM, Doan T, Seitzman GD.  2021.  Changes to ophthalmic clinical care during the coronavirus disease 2019 pandemic.. Curr Opin Ophthalmol. 

Doan T, Sahoo MK, Ruder K, Huang CH, Zhong L, Chen C, Hinterwirth A, Lin C, Gonzales JA, Pinsky BA et al..  2021.  Comprehensive pathogen detection for ocular infections.. J Clin Virol. 136:104759.

Gonzales JA, Doan T, VanZante A, Stewart JM, Sura A, Reddy A, Rasool N.  2021.  Detection of Tropheryma whipplei Genome From the Aqueous Humor by Metagenomic Sequencing.. Ann Intern Med. 

Ma KK, Kinde B, Doan T, Jacobs DS, Tone SOng.  2021.  Dual Molecular Diagnosis of Microsporidia (Encephalitozoon hellem) Keratoconjunctivitis in an Immunocompetent Adult.. Cornea. 40(2):242-244.

Coulibaly B, Sie A, Dah C, Bountogo M, Ouattara M, Compaoré A, Nikiema M, Tiansi JNankoné, Sibiri NDembélé, Brogdon JM et al..  2021.  Effect of a single dose of oral azithromycin on malaria parasitaemia in children: a randomized controlled trial.. Malar J. 20(1):360.

Doan T, Gebre T, Ayele B, Zerihun M, Hinterwirth A, Zhong L, Chen C, Ruder K, Zhou Z, Emerson PM et al..  2021.  Effect of Azithromycin on the Ocular Surface Microbiome of Children in a High Prevalence Trachoma Area.. Cornea. 

Oldenburg CE, Pinsky BA, Brogdon J, Chen C, Ruder K, Zhong L, Nyatigo F, Cook CA, Hinterwirth A, Lebas E et al..  2021.  Effect of Oral Azithromycin vs Placebo on COVID-19 Symptoms in Outpatients With SARS-CoV-2 Infection: A Randomized Clinical Trial.. JAMA. 

Arzika AM, Maliki R, Abdou A, Mankara AK, Harouna AN, Cook C, Hinterwirth A, Worden L, Zhong L, Chen C et al..  2021.  Gut resistome of preschool children after prolonged mass azithromycin distribution: a cluster-randomized trial.. Clin Infect Dis. 

Kaur G, Seitzman GD, Lietman TM, McLeod SD, Porco TC, Doan T, Deiner MS.  2021.  Keeping an eye on pink eye: a global conjunctivitis outbreak expert survey.. Int Health. 

Gonzales JA, Takhar JS, Joye A, Acharya NR, Chen C, Hinterwirth A, Doan T.  2021.  Peripheral Blood Transcriptome in Patients with Sarcoidosis-Associated Uveitis.. Ocul Immunol Inflamm. :1-4.

Brogdon JM, Sie A, N Dah C, Ouermi L, Coulibaly B, Lebas E, Zhong L, Chen C, Lietman TM, Keenan JD et al..  2021.  Poultry Ownership and Genetic Antibiotic Resistance Determinants in the Gut of Preschool Children.. Am J Trop Med Hyg. 

Sie A, Coulibaly B, Dah C, Bountogo M, Ouattara M, Compaoré G, Brogdon JM, Godwin WW, Lebas E, Doan T et al..  2021.  Single-dose azithromycin for child growth in Burkina Faso: a randomized controlled trial.. BMC Pediatr. 21(1):130.

Takhar J, Doan T, Gonzales JA.  2021.  Vitreoretinal Lymphoma: A Literature Review and Introduction of a New Diagnostic Method.. Asia Pac J Ophthalmol (Phila). 10(1):93-98.

Sie A, Dah C, Bountogo M, Ouattara M, Nebie E, Coulibaly B, Brogdon JM, Godwin WW, Lebas E, Doan T et al..  2020.  Adverse Events and Clinic Visits following a Single Dose of Oral Azithromycin among Preschool Children: A Randomized Placebo-Controlled Trial.. Am J Trop Med Hyg. 

Oldenburg CE, Doan T.  2020.  Azithromycin for severe COVID-19.. Lancet. 396(10256):936-937.

Ahmad TR, Doan T, Gonzales JA, Acharya NR, Tsui E.  2020.  Clinical Course of Preexisting Uveitis during Treatment of Lung Cancer with Durvalumab.. Ocul Immunol Inflamm. 28(4):566-570.

Ung L, Bispo PJM, Doan T, Van Gelder RN, Gilmore MS, Lietman T, Margolis TP, Zegans ME, Lee CS, Chodosh J.  2020.  Clinical metagenomics for infectious corneal ulcers: Rags to riches? Ocul Surf. 18(1):1-12.

Lalitha P, N Prajna V, Sikha M, Gunasekaran R, Hinterwirth A, Worden L, Chen C, Zhong L, Liu Z, Lietman TM et al..  2020.  Evaluation of Metagenomic Deep Sequencing as a Diagnostic Test for Infectious Keratitis.. Ophthalmology. 

Digitale J, Sie A, Coulibaly B, Ouermi L, Dah C, Tapsoba C, Bärnighausen T, Lebas E, Arzika AM, Glymour MMaria et al..  2020.  Gut Bacterial Diversity and Growth among Preschool Children in Burkina Faso.. Am J Trop Med Hyg. 103(6):2568-2573.

Oldenburg CE, Hinterwirth A, Sie A, Coulibaly B, Ouermi L, Dah C, Tapsoba C, Cummings SL, Zhong L, Chen C et al..  2020.  Gut Resistome After Oral Antibiotics in Preschool Children in Burkina Faso: A Randomized, Controlled Trial.. Clin Infect Dis. 70(3):525-527.

Oldenburg CE, Hinterwirth A, Worden L, Sie A, Dah C, Ouermi L, Coulibaly B, Zhong L, Chen C, Ruder K et al..  2020.  Indirect effect of oral azithromycin on the gut resistome of untreated children: a randomized controlled trial.. Int Health. 

Doan T, Worden L, Hinterwirth A, Arzika AM, Maliki R, Abdou A, Zhong L, Chen C, Cook C, Lebas E et al..  2020.  Macrolide and Nonmacrolide Resistance with Mass Azithromycin Distribution.. N Engl J Med. 383(20):1941-1950.

Sutra P, Rose-Nussbaumer J, Gonzales JA, Wang K, Hinterwirth A, Seitzman G, Bloomer M, Acharya N, Doan T.  2020.  Metagenomic Deep Sequencing to Investigate for an Infectious Etiology of Iridocorneal Endothelial Syndrome.. Cornea. 39(10):1307-1310.

Seitzman GD, Doan T.  2020.  No Time for Tears.. Ophthalmology. 127(7):980-981.

Doan T, Hinterwirth A, Worden L, Arzika AM, Maliki R, Chen C, Zhong L, Zhou Z, Acharya NR, Porco TC et al..  2020.  Post-antibiotic Ocular Surface Microbiome in Children: A Cluster-Randomized Trial.. Ophthalmology. 127(8):1127-1130.

Hinterwirth A, Sie A, Coulibaly B, Ouermi L, Dah C, Tapsoba C, Zhong L, Chen C, Lietman TM, Keenan JD et al..  2020.  Rapid Reduction of  Species in the Gut Microbiome of Preschool Children after Oral Azithromycin: A Randomized Controlled Trial.. Am J Trop Med Hyg. 103(3):1266-1269.

Doan T, Hinterwirth A, Arzika AM, Worden L, Chen C, Zhong L, Oldenburg CE, Keenan JD, Lietman TM.  2020.  Reduction of Coronavirus Burden With Mass Azithromycin Distribution.. Clin Infect Dis. 71(16):2282-2284.

Oldenburg CE, Doan T.  2020.  Rigorous Randomized Controlled Trial Implementation in the Era of COVID-19.. Am J Trop Med Hyg. 102(6):1154-1155.

Berlinberg EJ, Gonzales JA, Doan T, Acharya NR.  2019.  Association Between Noninfectious Uveitis and Psychological Stress.. JAMA Ophthalmol. 137(2):199-205.

Gonzales JA, Hinterwirth A, Shantha J, Wang K, Zhong L, Cummings SL, Qian Y, Wilson MR, Acharya NR, Doan T.  2019.  Association of Ocular Inflammation and Rubella Virus Persistence.. JAMA Ophthalmol. 137(4):435-438.

Seitzman GD, Thulasi P, Hinterwirth A, Chen C, Shantha J, Doan T.  2019.  Capnocytophaga Keratitis: Clinical Presentation and Use of Metagenomic Deep Sequencing for Diagnosis.. Cornea. 38(2):246-248.

Takhar JS, Joye AS, Somkijrungroj T, Laovirojjanakul W, Lin C-P, Lietman TM, Porco TC, Keenan JD, Gebreegziabher EA, Seitzman GD et al..  2019.  A double masked randomised 4-week, placebo-controlled study in the USA, Thailand and Taiwan to compare the efficacy of oral valganciclovir and topical 2% ganciclovir in the treatment of cytomegalovirus anterior uveitis: study protocol.. BMJ Open. 9(12):e033175.

Sie A, Ouattara M, Bountogo M, Bagagnan C, Coulibaly B, Boudo V, Lebas E, Brogdon JM, Lin Y, Bärnighausen T et al..  2019.  A double-masked placebo-controlled trial of azithromycin to prevent child mortality in Burkina Faso, West Africa: Community Health with Azithromycin Trial (CHAT) study protocol.. Trials. 20(1):675.

Gomez CA, Sahoo MK, Kahn GYasmeen, Zhong L, Montoya JG, Pinsky BA, Doan T.  2019.  Dual-target, real-time PCR for the diagnosis of intraocular  infections.. Br J Ophthalmol. 103(4):569-572.

Rathinam SR, Gonzales JA, Thundikandy R, Kanakath A, S Murugan B, Vedhanayaki R, Lim LL, Suhler EB, Al-Dhibi HA, Doan T et al..  2019.  Effect of Corticosteroid-Sparing Treatment With Mycophenolate Mofetil vs Methotrexate on Inflammation in Patients With Uveitis: A Randomized Clinical Trial.. JAMA. 322(10):936-945.

Ray KJ, Cotter SY, Arzika AM, Kim J, Boubacar N, Zhou Z, Zhong L, Porco TC, Keenan JD, Lietman TM et al..  2019.  High-throughput sequencing of pooled samples to determine community-level microbiome diversity.. Ann Epidemiol. 39:63-68.

Oldenburg CE, Sie A, Coulibaly B, Ouermi L, Dah C, Tapsoba C, Bärnighausen T, Lebas E, Arzika AM, Cummings S et al..  2019.  Indirect Effect of Azithromycin Use on the Intestinal Microbiome Diversity of Untreated Children: A Randomized Trial.. Open Forum Infect Dis. 6(3):ofz061.

Ung L, Acharya NR, Agarwal T, Alfonso EC, Bagga B, Bispo PJm, Burton MJ, Dart JKg, Doan T, Fleiszig SMj et al..  2019.  Infectious corneal ulceration: a proposal for neglected tropical disease status.. Bull World Health Organ. 97(12):854-856.

Tsui E, Gonzales JA, Shantha JG, Acharya N, Doan T.  2019.  Letermovir for the Management of Cytomegalovirus-associated Uveitis.. Ocul Immunol Inflamm. :1-6.

Keenan JD, Arzika AM, Maliki R, Boubacar N, Adamou SElh, Ali MMoussa, Cook C, Lebas E, Lin Y, Ray KJ et al..  2019.  Longer-Term Assessment of Azithromycin for Reducing Childhood Mortality in Africa.. N Engl J Med. 380(23):2207-2214.

Lietman TM, Doan T, Keenan JD.  2019.  Macrolide Resistance and Longer-Term Assessment of Azithromycin in MORDOR I. Reply.. N Engl J Med. 381(22):2184-2185.

Doan T, Arzika AM, Hinterwirth A, Maliki R, Zhong L, Cummings S, Sarkar S, Chen C, Porco TC, Keenan JD et al..  2019.  Macrolide Resistance in MORDOR I - A Cluster-Randomized Trial in Niger.. N Engl J Med. 380(23):2271-2273.

Seitzman GD, Hinterwirth A, Zhong L, Cummings S, Chen C, Driver TH, Lee MD, Doan T.  2019.  Metagenomic Deep Sequencing for the Diagnosis of Corneal and External Disease Infections.. Ophthalmology. 126(12):1724-1726.

Carpenter ML, Tan SK, Watson T, Bacher R, Nagesh V, Watts A, Bentley G, Weber J, Huang CH, Sahoo MK et al..  2019.  Metagenomic Next-Generation Sequencing for Identification and Quantitation of Transplant-Related DNA Viruses.. J Clin Microbiol. 57(12)

Sie A, Bountogo M, Nebie E, Ouattara M, Coulibaly B, Bagagnan C, Zabre P, Lebas E, Brogdon J, Godwin WW et al..  2019.  Neonatal azithromycin administration to prevent infant mortality: study protocol for a randomised controlled trial.. BMJ Open. 9(9):e031162.

Takhar JS, Doan TA, Gonzales JA.  2019.  Primary vitreoretinal lymphoma: empowering our clinical suspicion.. Curr Opin Ophthalmol. 30(6):491-499.

Niemeyer KM, Gonzales JA, Doan T, Browne EN, Rao MM, Acharya NR.  2019.  Time Trade-off Utility Values in Noninfectious Uveitis.. Am J Ophthalmol. 208:47-55.

Lalitha P, Seitzman GD, Kotecha R, Hinterwirth A, Chen C, Zhong L, Cummings S, Lebas E, Sahoo MK, Pinsky BA et al..  2019.  Unbiased Pathogen Detection and Host Gene Profiling for Conjunctivitis.. Ophthalmology. 126(8):1090-1094.

Takhar JS, Pawar VK, Marneris AG, Doan TA, Acharya NR, Gonzales JA.  2019.  When to Consider Bisphosphonates in Patients on Steroids for Chronic Ocular Inflammatory Conditions.. J Ocul Pharmacol Ther. 35(7):379-380.

Keenan JD, Bailey RL, West SK, Arzika AM, Hart J, Weaver J, Kalua K, Mrango Z, Ray KJ, Cook C et al..  2018.  Azithromycin to Reduce Childhood Mortality in Sub-Saharan Africa.. N Engl J Med. 378(17):1583-1592.

Moussa K, Doan T, Stewart JM, Shantha J, Gonzales J, Acharya N, Cunningham ET.  2018.  CYTOMEGALOVIRUS RETINITIS ASSOCIATED WITH OCCLUSIVE VASCULOPATHY IN AN ELDERLY, HUMAN IMMUNODEFICIENCY VIRUS-NEGATIVE MAN.. Retin Cases Brief Rep. 12 Suppl 1:S114-S117.

Chin SA, Morberg DP, Alemayehu W, Melese M, Lakew T, Chen MC, Zhou Z, Doan T, Cevallos V, Lietman TM et al..  2018.  Diversity of Chlamydia trachomatis in Trachoma-Hyperendemic Communities Treated With Azithromycin.. Am J Epidemiol. 187(9):1840-1845.

Oldenburg CE, Sie A, Coulibaly B, Ouermi L, Dah C, Tapsoba C, Bärnighausen T, Ray KJ, Zhong L, Cummings S et al..  2018.  Effect of Commonly Used Pediatric Antibiotics on Gut Microbial Diversity in Preschool Children in Burkina Faso: A Randomized Clinical Trial.. Open Forum Infect Dis. 5(11):ofy289.

Doan T, Hinterwirth A, Arzika AM, Cotter SY, Ray KJ, O'Brien KS, Zhong L, Chow ED, Zhou Z, Cummings SL et al..  2018.  Mass Azithromycin Distribution and Community Microbiome: A Cluster-Randomized Trial.. Open Forum Infect Dis. 5(8):ofy182.

Gonzales J, Doan T, Shantha JG, Bloomer M, Wilson MR, DeRisi JL, Acharya N.  2018.  Metagenomic deep sequencing of aqueous fluid detects intraocular lymphomas.. Br J Ophthalmol. 102(1):6-8.

Doan T, Arzika AM, Ray KJ, Cotter SY, Kim J, Maliki R, Zhong L, Zhou Z, Porco TC, Vanderschelden B et al..  2017.  Gut Microbial Diversity in Antibiotic-Naive Children After Systemic Antibiotic Exposure: A Randomized Controlled Trial.. Clin Infect Dis. 64(9):1147-1153.

Doan T, Acharya NR, Pinsky BA, Sahoo MK, Chow ED, Banaei N, Budvytiene I, Cevallos V, Zhong L, Zhou Z et al..  2017.  Metagenomic DNA Sequencing for the Diagnosis of Intraocular Infections.. Ophthalmology. 124(8):1247-1248.

Doan T, Pinsky BA.  2016.  Current and future molecular diagnostics for ocular infectious diseases.. Curr Opin Ophthalmol. 27(6):561-567.

Doan T, Wilson MR, Crawford ED, Chow ED, Khan LM, Knopp KA, O'Donovan BD, Xia D, Hacker JK, Stewart JM et al..  2016.  Illuminating uveitis: metagenomic deep sequencing identifies common and rare pathogens.. Genome Med. 8(1):90.

Doan T, Akileswaran L, Andersen D, Johnson B, Ko N, Shrestha A, Shestopalov V, Lee CS, Lee AY, Van Gelder RN.  2016.  Paucibacterial Microbiome and Resident DNA Virome of the Healthy Conjunctiva.. Invest Ophthalmol Vis Sci. 57(13):5116-5126.

Azevedo AW, Doan T, Moaven H, Sokal I, Baameur F, Vishnivetskiy SA, Homan KT, Tesmer JJG, Gurevich VV, Chen J et al..  2015.  C-terminal threonines and serines play distinct roles in the desensitization of rhodopsin, a G protein-coupled receptor.. Elife. 4

Doan T, Vemulakonda GA, Choi D, C Keene D, Akileswaran L, Van Gelder RN, Chao JR.  2014.  Retinal neovascularization and endogenous fungal endophthalmitis in intravenous drug users.. Ophthalmology. 121(9):1847-8.e2.

Doan T, Chao JR.  2014.  A woman with bilateral maculopathy and acquired vitamin B12 deficiency.. Eye (Lond). 28(7):905-6.

Doan T, Azevedo AW, Hurley JB, Rieke F.  2009.  Arrestin competition influences the kinetics and variability of the single-photon responses of mammalian rod photoreceptors.. J Neurosci. 29(38):11867-79.

Zhang H, Li S, Doan T, Rieke F, Detwiler PB, Frederick JM, Baehr W.  2007.  Deletion of PrBP/delta impedes transport of GRK1 and PDE6 catalytic subunits to photoreceptor outer segments.. Proc Natl Acad Sci U S A. 104(21):8857-62.

Doan T, Mendez A, Detwiler PB, Chen J, Rieke F.  2006.  Multiple phosphorylation sites confer reproducibility of the rod's single-photon responses.. Science. 313(5786):530-3.