Seitzman GD, Kalua K, Misanjo ES, Chen C, Ouimette K, Zhong L, Liu YH, Yu D, Abraham T, Wu N et al..  2025.  Comparison of antimicrobial resistance genes on the ocular surface of patients with corneal infections in California and Malawi.. Int Health. 

Nguyen RD, Nortey J, Gebreegziabher E, Hinterwirth A, Zhong L, Chen C, Doan T, Lietman TM, Gonzales JA.  2025.  A Distinguishable Peripheral Blood and Conjunctival Transcriptome and Gut Microbiome in Sjögren's Disease: A Pilot Study.. Eye Contact Lens. 

Yan D, N Prajna V, Lalitha P, Sansanayudh W, Satitpitakul V, Laovirojjanakul W, Chaudhary M, Bountogo M, Sie A, Coulibaly B et al..  2024.  Association of weather variables with pathogens contributing to conjunctivitis worldwide.. Clin Infect Dis. 

Seitzman GD, Prajna L, N Prajna V, Sansanayudh W, Satitpitakul V, Laovirojjanakul W, Chen C, Zhong L, Ouimette K, Redd T et al..  2024.  Biomarker Detection and Validation for Corneal Involvement in Patients With Acute Infectious Conjunctivitis.. JAMA Ophthalmol. 

Manoharan-Basil SSanthini, Gestels Z, Abdelatti S, De Baetselier I, Vanbaelen T, Hinterwirth A, Doan T, Lietman T, Kenyon C.  2024.  Could the effect of antimicrobials on antimicrobial resistance be saturated at high-antimicrobial consumption? A comparison of the MORDOR and ResistAZM studies. Int J Infect Dis. 145:107082.

Tran H, H? T, Hoang L, Tran Y, Ruder K, Zhong L, Chen C, Liu YH, Yu D, Abraham T et al..  2024.  Coxsackievirus A24 Causing Acute Conjunctivitis in a 2023 outbreak in Vietnam.. Int J Infect Dis. :107133.

Choo C, Cote O, Bostwick K, Regueiro M, Wells J, Grossniklaus HE, Gonzales J, Yeh S, Hinterwirth A, Doan T et al..  2024.  Deep sequencing as a diagnostic tool in patients with suspected primary vitreoretinal lymphoma.. Br J Ophthalmol. 

Kalua K, Misanjo ES, Lietman TM, Ruder K, Zhong L, Chen C, Liu YH, Yu D, Abraham T, Wu N et al..  2024.  Etiologies of Infectious Keratitis in Malawi.. Am J Trop Med Hyg. 

Doan T, Liu Z, Sie A, Dah C, Bountogo M, Ouattara M, Coulibaly B, Kiemde D, Zonou G, Nebie E et al..  2024.  Gut Microbiome Diversity and Antimicrobial Resistance After a Single Dose of Oral Azithromycin in Children: A Randomized Placebo-Controlled Trial.. Am J Trop Med Hyg. 

Seitzman GD, Keenan JD, Lietman TM, Ruder K, Zhong L, Chen C, Liu YH, Yu D, Abraham T, Hinterwirth A et al..  2024.  Human Conjunctival Transcriptome in Acanthamoeba Keratitis: An Exploratory Study.. Cornea. 

Arzika AM, Abdou A, Maliki R, Beido N, Kadri B, Harouna AN, Galo AN, Alio MK, Lebas E, Oldenburg CE et al..  2024.  Prolonged mass azithromycin distributions and macrolide resistance determinants among preschool children in Niger: A sub-study of a cluster-randomized trial (MORDOR).. PLoS Med. 21(5):e1004386.

Prajna NVenkatesh, Prajna L, Teja V, Gunasekaran R, Ruder K, Zhong L, Yu D, Liu D, Abraham T, Ao W et al..  2023.  Apollo Rising: Acute Conjunctivitis Outbreak in India, 2022. Cornea Open. (2)

Kanai K, Whiteside M, Wong M, La T, Nassiri M, Lee S, Yeung SKei, Coulter A, Ruder K, Chen C et al..  2023.  Case Series: Unbiased Deep Sequencing Analysis of Acute Infectious Conjunctivitis in an Ambulatory Eye Center in Berkeley, California.. Optom Vis Sci. 

Amza A, Nassirou B, Kadri B, Ali S, Mariama B, Ibrahim CMamadou, Roufaye LAboubacar, Lebas E, Colby E, Zhong L et al..  2023.  Comprehensive Profile of Pathogens and Antimicrobial Resistance in Conjunctivitis Cases from Niger.. Am J Trop Med Hyg. 109(6):1333-1338.

M Vagefi R, Idowu OO, Miller A, Doan T, Chen C, Hinterwirth A, Zhong L, Ahmad M, Ashraf DC, Grob SR et al..  2023.  Metagenomic Deep Sequencing for Orbital Inflammatory Disease.. Ocul Immunol Inflamm. :1-4.

Tran H, Hoang L, Tran Y, H? T, Ruder K, Zhong L, Chen C, Yu D, Liu YH, Abraham T et al..  2023.  Pathogen Profiles of Infectious Conjunctivitis in Ho Chi Minh City, Vietnam.. Cornea Open. 2(4)

Tsui E, Sella R, Tham V, Kong AW, McClean E, Goren L, Bahar I, Cherian N, Ramirez J, Hughes RE et al..  2023.  Pathogen Surveillance for Acute Infectious Conjunctivitis.. JAMA Ophthalmol. 

Johnson K, Taleo F, Willie K, Amel E, Nanu M, Alguet M, Wass J, Rymill P, Solomon A, Ruder K et al..  2023.  Viruses Associated with Acute Conjunctivitis in Vanuatu.. Am J Trop Med Hyg. 

Ousmane S, Kollo IA, Jambou R, Boubacar R, Arzika AM, Maliki R, Amza A, Liu Z, Lebas E, Colby E et al..  2023.  Wastewater-Based Surveillance of Antimicrobial Resistance in Niger: An Exploratory Study.. Am J Trop Med Hyg. 

Zhao M, Ma P, Xie Q, Bui A, Yonamine S, Hinterwirth A, Zhong L, Chen C, Doan T, Han Y.  2022.  Biomarkers for primary open-angle glaucoma progression.. Exp Eye Res. :109025.

Bountogo M, Sie A, Coulibaly B, Ruder K, Chen C, Zhong L, Colby E, Lebas E, Deiner M, Hinterwirth A et al..  2022.  Deep sequencing analysis of acute conjunctivitis in Burkina Faso, Africa.. Int Health. 

Lalitha P, N Prajna V, Gunasekaran R, Teja GVishnu, Sharma SS, Hinterwirth A, Ruder K, Zhong L, Chen C, Deiner M et al..  2022.  Deep sequencing analysis of clinical samples from patients with acute infectious conjunctivitis during the COVID-19 delta surge in Madurai, India.. J Clin Virol. 157:105318.

Oldenburg CE, Hinterwirth A, Dah C, Millogo O, Coulibaly B, Ouédraogo M, Sie A, Chen C, Zhong L, Ruder K et al..  2022.  Gut Microbiome among Children with Uncomplicated Severe Acute Malnutrition in a Randomized Controlled Trial of Azithromycin versus Amoxicillin.. Am J Trop Med Hyg. 

Oldenburg CE, Hinterwirth A, Ourohiré M, Dah C, Ouédraogo M, Sie A, Boudo V, Chen C, Ruder K, Zhong L et al..  2022.  Gut Resistome after Antibiotics among Children with Uncomplicated Severe Acute Malnutrition: A Randomized Controlled Trial.. Am J Trop Med Hyg. 107(1):59-64.

Redd TK, Lalitha P, N Prajna V, Sikha M, Gunasekaran R, Hinterwirth A, Chen C, Zhong L, Liu Z, Lietman TM et al..  2022.  Impact of Sample Collection Order on the Diagnostic Performance of Metagenomic Deep Sequencing for Infectious Keratitis.. Cornea. 41(1):39-44.

N Prajna V, Lalitha P, Teja GVishnu, Gunasekaran R, Sharma SS, Hinterwirth A, Ruder K, Zhong L, Chen C, Deiner M et al..  2022.  Outpatient human coronavirus associated conjunctivitis in India.. J Clin Virol. 157:105300.

Doan T, Sahoo MK, Ruder K, Huang CH, Zhong L, Chen C, Hinterwirth A, Lin C, Gonzales JA, Pinsky BA et al..  2021.  Comprehensive pathogen detection for ocular infections.. J Clin Virol. 136:104759.

Doan T, Gebre T, Ayele B, Zerihun M, Hinterwirth A, Zhong L, Chen C, Ruder K, Zhou Z, Emerson PM et al..  2021.  Effect of Azithromycin on the Ocular Surface Microbiome of Children in a High Prevalence Trachoma Area.. Cornea. 

Oldenburg CE, Pinsky BA, Brogdon J, Chen C, Ruder K, Zhong L, Nyatigo F, Cook CA, Hinterwirth A, Lebas E et al..  2021.  Effect of Oral Azithromycin vs Placebo on COVID-19 Symptoms in Outpatients With SARS-CoV-2 Infection: A Randomized Clinical Trial.. JAMA. 

Arzika AM, Maliki R, Abdou A, Mankara AK, Harouna AN, Cook C, Hinterwirth A, Worden L, Zhong L, Chen C et al..  2021.  Gut resistome of preschool children after prolonged mass azithromycin distribution: a cluster-randomized trial.. Clin Infect Dis. 

Gonzales JA, Takhar JS, Joye A, Acharya NR, Chen C, Hinterwirth A, Doan T.  2021.  Peripheral Blood Transcriptome in Patients with Sarcoidosis-Associated Uveitis.. Ocul Immunol Inflamm. :1-4.

Lalitha P, N Prajna V, Sikha M, Gunasekaran R, Hinterwirth A, Worden L, Chen C, Zhong L, Liu Z, Lietman TM et al..  2020.  Evaluation of Metagenomic Deep Sequencing as a Diagnostic Test for Infectious Keratitis.. Ophthalmology. 

Oldenburg CE, Hinterwirth A, Sie A, Coulibaly B, Ouermi L, Dah C, Tapsoba C, Cummings SL, Zhong L, Chen C et al..  2020.  Gut Resistome After Oral Antibiotics in Preschool Children in Burkina Faso: A Randomized, Controlled Trial.. Clin Infect Dis. 70(3):525-527.

Oldenburg CE, Hinterwirth A, Worden L, Sie A, Dah C, Ouermi L, Coulibaly B, Zhong L, Chen C, Ruder K et al..  2020.  Indirect effect of oral azithromycin on the gut resistome of untreated children: a randomized controlled trial.. Int Health. 

Doan T, Worden L, Hinterwirth A, Arzika AM, Maliki R, Abdou A, Zhong L, Chen C, Cook C, Lebas E et al..  2020.  Macrolide and Nonmacrolide Resistance with Mass Azithromycin Distribution.. N Engl J Med. 383(20):1941-1950.

Sutra P, Rose-Nussbaumer J, Gonzales JA, Wang K, Hinterwirth A, Seitzman G, Bloomer M, Acharya N, Doan T.  2020.  Metagenomic Deep Sequencing to Investigate for an Infectious Etiology of Iridocorneal Endothelial Syndrome.. Cornea. 39(10):1307-1310.

Doan T, Hinterwirth A, Worden L, Arzika AM, Maliki R, Chen C, Zhong L, Zhou Z, Acharya NR, Porco TC et al..  2020.  Post-antibiotic Ocular Surface Microbiome in Children: A Cluster-Randomized Trial.. Ophthalmology. 127(8):1127-1130.

Hinterwirth A, Sie A, Coulibaly B, Ouermi L, Dah C, Tapsoba C, Zhong L, Chen C, Lietman TM, Keenan JD et al..  2020.  Rapid Reduction of  Species in the Gut Microbiome of Preschool Children after Oral Azithromycin: A Randomized Controlled Trial.. Am J Trop Med Hyg. 103(3):1266-1269.

Doan T, Hinterwirth A, Arzika AM, Worden L, Chen C, Zhong L, Oldenburg CE, Keenan JD, Lietman TM.  2020.  Reduction of Coronavirus Burden With Mass Azithromycin Distribution.. Clin Infect Dis. 71(16):2282-2284.

Gonzales JA, Hinterwirth A, Shantha J, Wang K, Zhong L, Cummings SL, Qian Y, Wilson MR, Acharya NR, Doan T.  2019.  Association of Ocular Inflammation and Rubella Virus Persistence.. JAMA Ophthalmol. 137(4):435-438.

Seitzman GD, Thulasi P, Hinterwirth A, Chen C, Shantha J, Doan T.  2019.  Capnocytophaga Keratitis: Clinical Presentation and Use of Metagenomic Deep Sequencing for Diagnosis.. Cornea. 38(2):246-248.

Doan T, Arzika AM, Hinterwirth A, Maliki R, Zhong L, Cummings S, Sarkar S, Chen C, Porco TC, Keenan JD et al..  2019.  Macrolide Resistance in MORDOR I - A Cluster-Randomized Trial in Niger.. N Engl J Med. 380(23):2271-2273.

Seitzman GD, Hinterwirth A, Zhong L, Cummings S, Chen C, Driver TH, Lee MD, Doan T.  2019.  Metagenomic Deep Sequencing for the Diagnosis of Corneal and External Disease Infections.. Ophthalmology. 126(12):1724-1726.

Carpenter ML, Tan SK, Watson T, Bacher R, Nagesh V, Watts A, Bentley G, Weber J, Huang CH, Sahoo MK et al..  2019.  Metagenomic Next-Generation Sequencing for Identification and Quantitation of Transplant-Related DNA Viruses.. J Clin Microbiol. 57(12)

Lalitha P, Seitzman GD, Kotecha R, Hinterwirth A, Chen C, Zhong L, Cummings S, Lebas E, Sahoo MK, Pinsky BA et al..  2019.  Unbiased Pathogen Detection and Host Gene Profiling for Conjunctivitis.. Ophthalmology. 126(8):1090-1094.

Doan T, Hinterwirth A, Arzika AM, Cotter SY, Ray KJ, O'Brien KS, Zhong L, Chow ED, Zhou Z, Cummings SL et al..  2018.  Mass Azithromycin Distribution and Community Microbiome: A Cluster-Randomized Trial.. Open Forum Infect Dis. 5(8):ofy182.