Seitzman GD, Kalua K, Misanjo ES, Chen C, Ouimette K, Zhong L, Liu YH, Yu D, Abraham T, Wu N et al..  2025.  Comparison of antimicrobial resistance genes on the ocular surface of patients with corneal infections in California and Malawi.. Int Health. 

Nguyen RD, Nortey J, Gebreegziabher E, Hinterwirth A, Zhong L, Chen C, Doan T, Lietman TM, Gonzales JA.  2025.  A Distinguishable Peripheral Blood and Conjunctival Transcriptome and Gut Microbiome in Sjögren's Disease: A Pilot Study.. Eye Contact Lens. 

Yan D, N Prajna V, Lalitha P, Sansanayudh W, Satitpitakul V, Laovirojjanakul W, Chaudhary M, Bountogo M, Sie A, Coulibaly B et al..  2024.  Association of weather variables with pathogens contributing to conjunctivitis worldwide.. Clin Infect Dis. 

Seitzman GD, Prajna L, N Prajna V, Sansanayudh W, Satitpitakul V, Laovirojjanakul W, Chen C, Zhong L, Ouimette K, Redd T et al..  2024.  Biomarker Detection and Validation for Corneal Involvement in Patients With Acute Infectious Conjunctivitis.. JAMA Ophthalmol. 

Tran H, H? T, Hoang L, Tran Y, Ruder K, Zhong L, Chen C, Liu YH, Yu D, Abraham T et al..  2024.  Coxsackievirus A24 Causing Acute Conjunctivitis in a 2023 outbreak in Vietnam.. Int J Infect Dis. :107133.

Kalua K, Misanjo ES, Lietman TM, Ruder K, Zhong L, Chen C, Liu YH, Yu D, Abraham T, Wu N et al..  2024.  Etiologies of Infectious Keratitis in Malawi.. Am J Trop Med Hyg. 

Doan T, Liu Z, Sie A, Dah C, Bountogo M, Ouattara M, Coulibaly B, Kiemde D, Zonou G, Nebie E et al..  2024.  Gut Microbiome Diversity and Antimicrobial Resistance After a Single Dose of Oral Azithromycin in Children: A Randomized Placebo-Controlled Trial.. Am J Trop Med Hyg. 

Seitzman GD, Keenan JD, Lietman TM, Ruder K, Zhong L, Chen C, Liu YH, Yu D, Abraham T, Hinterwirth A et al..  2024.  Human Conjunctival Transcriptome in Acanthamoeba Keratitis: An Exploratory Study.. Cornea. 

Arzika AM, Abdou A, Maliki R, Beido N, Kadri B, Harouna AN, Galo AN, Alio MK, Lebas E, Oldenburg CE et al..  2024.  Prolonged mass azithromycin distributions and macrolide resistance determinants among preschool children in Niger: A sub-study of a cluster-randomized trial (MORDOR).. PLoS Med. 21(5):e1004386.

Amza A, Kadri B, Nassirou B, Arzika A, Gebreegziabher E, Hu H, Zhong L, Chen C, Yu D, Abraham T et al..  2024.  Seroepidemiology of trachoma in a low prevalence region receiving annual mass azithromycin distribution in Maradi, Niger.. PLoS Negl Trop Dis. 18(12):e0012727.

Prajna NVenkatesh, Prajna L, Teja V, Gunasekaran R, Ruder K, Zhong L, Yu D, Liu D, Abraham T, Ao W et al..  2023.  Apollo Rising: Acute Conjunctivitis Outbreak in India, 2022. Cornea Open. (2)

Kanai K, Whiteside M, Wong M, La T, Nassiri M, Lee S, Yeung SKei, Coulter A, Ruder K, Chen C et al..  2023.  Case Series: Unbiased Deep Sequencing Analysis of Acute Infectious Conjunctivitis in an Ambulatory Eye Center in Berkeley, California.. Optom Vis Sci. 

Amza A, Nassirou B, Kadri B, Ali S, Mariama B, Ibrahim CMamadou, Roufaye LAboubacar, Lebas E, Colby E, Zhong L et al..  2023.  Comprehensive Profile of Pathogens and Antimicrobial Resistance in Conjunctivitis Cases from Niger.. Am J Trop Med Hyg. 109(6):1333-1338.

M Vagefi R, Idowu OO, Miller A, Doan T, Chen C, Hinterwirth A, Zhong L, Ahmad M, Ashraf DC, Grob SR et al..  2023.  Metagenomic Deep Sequencing for Orbital Inflammatory Disease.. Ocul Immunol Inflamm. :1-4.

Tran H, Hoang L, Tran Y, H? T, Ruder K, Zhong L, Chen C, Yu D, Liu YH, Abraham T et al..  2023.  Pathogen Profiles of Infectious Conjunctivitis in Ho Chi Minh City, Vietnam.. Cornea Open. 2(4)

Tsui E, Sella R, Tham V, Kong AW, McClean E, Goren L, Bahar I, Cherian N, Ramirez J, Hughes RE et al..  2023.  Pathogen Surveillance for Acute Infectious Conjunctivitis.. JAMA Ophthalmol. 

Johnson K, Taleo F, Willie K, Amel E, Nanu M, Alguet M, Wass J, Rymill P, Solomon A, Ruder K et al..  2023.  Viruses Associated with Acute Conjunctivitis in Vanuatu.. Am J Trop Med Hyg. 

Ousmane S, Kollo IA, Jambou R, Boubacar R, Arzika AM, Maliki R, Amza A, Liu Z, Lebas E, Colby E et al..  2023.  Wastewater-Based Surveillance of Antimicrobial Resistance in Niger: An Exploratory Study.. Am J Trop Med Hyg. 

Zhao M, Ma P, Xie Q, Bui A, Yonamine S, Hinterwirth A, Zhong L, Chen C, Doan T, Han Y.  2022.  Biomarkers for primary open-angle glaucoma progression.. Exp Eye Res. :109025.

Bountogo M, Sie A, Coulibaly B, Ruder K, Chen C, Zhong L, Colby E, Lebas E, Deiner M, Hinterwirth A et al..  2022.  Deep sequencing analysis of acute conjunctivitis in Burkina Faso, Africa.. Int Health. 

Lalitha P, N Prajna V, Gunasekaran R, Teja GVishnu, Sharma SS, Hinterwirth A, Ruder K, Zhong L, Chen C, Deiner M et al..  2022.  Deep sequencing analysis of clinical samples from patients with acute infectious conjunctivitis during the COVID-19 delta surge in Madurai, India.. J Clin Virol. 157:105318.

Oldenburg CE, Hinterwirth A, Dah C, Millogo O, Coulibaly B, Ouédraogo M, Sie A, Chen C, Zhong L, Ruder K et al..  2022.  Gut Microbiome among Children with Uncomplicated Severe Acute Malnutrition in a Randomized Controlled Trial of Azithromycin versus Amoxicillin.. Am J Trop Med Hyg. 

Oldenburg CE, Hinterwirth A, Ourohiré M, Dah C, Ouédraogo M, Sie A, Boudo V, Chen C, Ruder K, Zhong L et al..  2022.  Gut Resistome after Antibiotics among Children with Uncomplicated Severe Acute Malnutrition: A Randomized Controlled Trial.. Am J Trop Med Hyg. 107(1):59-64.

Redd TK, Lalitha P, N Prajna V, Sikha M, Gunasekaran R, Hinterwirth A, Chen C, Zhong L, Liu Z, Lietman TM et al..  2022.  Impact of Sample Collection Order on the Diagnostic Performance of Metagenomic Deep Sequencing for Infectious Keratitis.. Cornea. 41(1):39-44.

N Prajna V, Lalitha P, Teja GVishnu, Gunasekaran R, Sharma SS, Hinterwirth A, Ruder K, Zhong L, Chen C, Deiner M et al..  2022.  Outpatient human coronavirus associated conjunctivitis in India.. J Clin Virol. 157:105300.

N Prajna V, Lalitha P, Chen C, Zhong L, Lietman TM, Doan T, Seitzman GD.  2021.  Acute Keratoconjunctivitis Resulting From Coinfection With Avian Newcastle Virus and Human Adenovirus.. Cornea. 

Doan T, Sahoo MK, Ruder K, Huang CH, Zhong L, Chen C, Hinterwirth A, Lin C, Gonzales JA, Pinsky BA et al..  2021.  Comprehensive pathogen detection for ocular infections.. J Clin Virol. 136:104759.

Doan T, Gebre T, Ayele B, Zerihun M, Hinterwirth A, Zhong L, Chen C, Ruder K, Zhou Z, Emerson PM et al..  2021.  Effect of Azithromycin on the Ocular Surface Microbiome of Children in a High Prevalence Trachoma Area.. Cornea. 

Oldenburg CE, Pinsky BA, Brogdon J, Chen C, Ruder K, Zhong L, Nyatigo F, Cook CA, Hinterwirth A, Lebas E et al..  2021.  Effect of Oral Azithromycin vs Placebo on COVID-19 Symptoms in Outpatients With SARS-CoV-2 Infection: A Randomized Clinical Trial.. JAMA. 

Arzika AM, Maliki R, Abdou A, Mankara AK, Harouna AN, Cook C, Hinterwirth A, Worden L, Zhong L, Chen C et al..  2021.  Gut resistome of preschool children after prolonged mass azithromycin distribution: a cluster-randomized trial.. Clin Infect Dis. 

Gonzales JA, Takhar JS, Joye A, Acharya NR, Chen C, Hinterwirth A, Doan T.  2021.  Peripheral Blood Transcriptome in Patients with Sarcoidosis-Associated Uveitis.. Ocul Immunol Inflamm. :1-4.

Brogdon JM, Sie A, N Dah C, Ouermi L, Coulibaly B, Lebas E, Zhong L, Chen C, Lietman TM, Keenan JD et al..  2021.  Poultry Ownership and Genetic Antibiotic Resistance Determinants in the Gut of Preschool Children.. Am J Trop Med Hyg. 

Lalitha P, N Prajna V, Sikha M, Gunasekaran R, Hinterwirth A, Worden L, Chen C, Zhong L, Liu Z, Lietman TM et al..  2020.  Evaluation of Metagenomic Deep Sequencing as a Diagnostic Test for Infectious Keratitis.. Ophthalmology. 

Oldenburg CE, Hinterwirth A, Sie A, Coulibaly B, Ouermi L, Dah C, Tapsoba C, Cummings SL, Zhong L, Chen C et al..  2020.  Gut Resistome After Oral Antibiotics in Preschool Children in Burkina Faso: A Randomized, Controlled Trial.. Clin Infect Dis. 70(3):525-527.

Oldenburg CE, Hinterwirth A, Worden L, Sie A, Dah C, Ouermi L, Coulibaly B, Zhong L, Chen C, Ruder K et al..  2020.  Indirect effect of oral azithromycin on the gut resistome of untreated children: a randomized controlled trial.. Int Health. 

Doan T, Worden L, Hinterwirth A, Arzika AM, Maliki R, Abdou A, Zhong L, Chen C, Cook C, Lebas E et al..  2020.  Macrolide and Nonmacrolide Resistance with Mass Azithromycin Distribution.. N Engl J Med. 383(20):1941-1950.

Doan T, Hinterwirth A, Worden L, Arzika AM, Maliki R, Chen C, Zhong L, Zhou Z, Acharya NR, Porco TC et al..  2020.  Post-antibiotic Ocular Surface Microbiome in Children: A Cluster-Randomized Trial.. Ophthalmology. 127(8):1127-1130.

Hinterwirth A, Sie A, Coulibaly B, Ouermi L, Dah C, Tapsoba C, Zhong L, Chen C, Lietman TM, Keenan JD et al..  2020.  Rapid Reduction of  Species in the Gut Microbiome of Preschool Children after Oral Azithromycin: A Randomized Controlled Trial.. Am J Trop Med Hyg. 103(3):1266-1269.

Doan T, Hinterwirth A, Arzika AM, Worden L, Chen C, Zhong L, Oldenburg CE, Keenan JD, Lietman TM.  2020.  Reduction of Coronavirus Burden With Mass Azithromycin Distribution.. Clin Infect Dis. 71(16):2282-2284.

Seitzman GD, Thulasi P, Hinterwirth A, Chen C, Shantha J, Doan T.  2019.  Capnocytophaga Keratitis: Clinical Presentation and Use of Metagenomic Deep Sequencing for Diagnosis.. Cornea. 38(2):246-248.

Doan T, Arzika AM, Hinterwirth A, Maliki R, Zhong L, Cummings S, Sarkar S, Chen C, Porco TC, Keenan JD et al..  2019.  Macrolide Resistance in MORDOR I - A Cluster-Randomized Trial in Niger.. N Engl J Med. 380(23):2271-2273.

Seitzman GD, Hinterwirth A, Zhong L, Cummings S, Chen C, Driver TH, Lee MD, Doan T.  2019.  Metagenomic Deep Sequencing for the Diagnosis of Corneal and External Disease Infections.. Ophthalmology. 126(12):1724-1726.

Lalitha P, Seitzman GD, Kotecha R, Hinterwirth A, Chen C, Zhong L, Cummings S, Lebas E, Sahoo MK, Pinsky BA et al..  2019.  Unbiased Pathogen Detection and Host Gene Profiling for Conjunctivitis.. Ophthalmology. 126(8):1090-1094.