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2024
Doan T, Liu Z, Sie A, Dah C, Bountogo M, Ouattara M, Coulibaly B, Kiemde D, Zonou G, Nebie E et al..  2024.  Gut Microbiome Diversity and Antimicrobial Resistance After a Single Dose of Oral Azithromycin in Children: A Randomized Placebo-Controlled Trial.. Am J Trop Med Hyg.
2023
Prajna NVenkatesh, Prajna L, Teja V, Gunasekaran R, Ruder K, Zhong L, Yu D, Liu D, Abraham T, Ao W et al..  2023.  Apollo Rising: Acute Conjunctivitis Outbreak in India, 2022. Cornea Open. (2)
Amza A, Nassirou B, Kadri B, Ali S, Mariama B, Ibrahim CMamadou, Roufaye LAboubacar, Lebas E, Colby E, Zhong L et al..  2023.  Comprehensive Profile of Pathogens and Antimicrobial Resistance in Conjunctivitis Cases from Niger.. Am J Trop Med Hyg. 109(6):1333-1338.
M Vagefi R, Idowu OO, Miller A, Doan T, Chen C, Hinterwirth A, Zhong L, Ahmad M, Ashraf DC, Grob SR et al..  2023.  Metagenomic Deep Sequencing for Orbital Inflammatory Disease.. Ocul Immunol Inflamm. :1-4.
Tsui E, Sella R, Tham V, Kong AW, McClean E, Goren L, Bahar I, Cherian N, Ramirez J, Hughes RE et al..  2023.  Pathogen Surveillance for Acute Infectious Conjunctivitis.. JAMA Ophthalmol.
Johnson K, Taleo F, Willie K, Amel E, Nanu M, Alguet M, Wass J, Rymill P, Solomon A, Ruder K et al..  2023.  Viruses Associated with Acute Conjunctivitis in Vanuatu.. Am J Trop Med Hyg.
Ousmane S, Kollo IA, Jambou R, Boubacar R, Arzika AM, Maliki R, Amza A, Liu Z, Lebas E, Colby E et al..  2023.  Wastewater-Based Surveillance of Antimicrobial Resistance in Niger: An Exploratory Study.. Am J Trop Med Hyg.
2022
Zhao M, Ma P, Xie Q, Bui A, Yonamine S, Hinterwirth A, Zhong L, Chen C, Doan T, Han Y.  2022.  Biomarkers for primary open-angle glaucoma progression.. Exp Eye Res. :109025.
Bountogo M, Sie A, Coulibaly B, Ruder K, Chen C, Zhong L, Colby E, Lebas E, Deiner M, Hinterwirth A et al..  2022.  Deep sequencing analysis of acute conjunctivitis in Burkina Faso, Africa.. Int Health.
Lalitha P, N Prajna V, Gunasekaran R, Teja GVishnu, Sharma SS, Hinterwirth A, Ruder K, Zhong L, Chen C, Deiner M et al..  2022.  Deep sequencing analysis of clinical samples from patients with acute infectious conjunctivitis during the COVID-19 delta surge in Madurai, India.. J Clin Virol. 157:105318.
Oldenburg CE, Hinterwirth A, Dah C, Millogo O, Coulibaly B, Ouédraogo M, Sie A, Chen C, Zhong L, Ruder K et al..  2022.  Gut Microbiome among Children with Uncomplicated Severe Acute Malnutrition in a Randomized Controlled Trial of Azithromycin versus Amoxicillin.. Am J Trop Med Hyg.
Oldenburg CE, Hinterwirth A, Ourohiré M, Dah C, Ouédraogo M, Sie A, Boudo V, Chen C, Ruder K, Zhong L et al..  2022.  Gut Resistome after Antibiotics among Children with Uncomplicated Severe Acute Malnutrition: A Randomized Controlled Trial.. Am J Trop Med Hyg. 107(1):59-64.
Redd TK, Lalitha P, N Prajna V, Sikha M, Gunasekaran R, Hinterwirth A, Chen C, Zhong L, Liu Z, Lietman TM et al..  2022.  Impact of Sample Collection Order on the Diagnostic Performance of Metagenomic Deep Sequencing for Infectious Keratitis.. Cornea. 41(1):39-44.
N Prajna V, Lalitha P, Teja GVishnu, Gunasekaran R, Sharma SS, Hinterwirth A, Ruder K, Zhong L, Chen C, Deiner M et al..  2022.  Outpatient human coronavirus associated conjunctivitis in India.. J Clin Virol. 157:105300.
2021
N Prajna V, Lalitha P, Chen C, Zhong L, Lietman TM, Doan T, Seitzman GD.  2021.  Acute Keratoconjunctivitis Resulting From Coinfection With Avian Newcastle Virus and Human Adenovirus.. Cornea.
Doan T, Sahoo MK, Ruder K, Huang CH, Zhong L, Chen C, Hinterwirth A, Lin C, Gonzales JA, Pinsky BA et al..  2021.  Comprehensive pathogen detection for ocular infections.. J Clin Virol. 136:104759.
Doan T, Gebre T, Ayele B, Zerihun M, Hinterwirth A, Zhong L, Chen C, Ruder K, Zhou Z, Emerson PM et al..  2021.  Effect of Azithromycin on the Ocular Surface Microbiome of Children in a High Prevalence Trachoma Area.. Cornea.
Oldenburg CE, Pinsky BA, Brogdon J, Chen C, Ruder K, Zhong L, Nyatigo F, Cook CA, Hinterwirth A, Lebas E et al..  2021.  Effect of Oral Azithromycin vs Placebo on COVID-19 Symptoms in Outpatients With SARS-CoV-2 Infection: A Randomized Clinical Trial.. JAMA.
Arzika AM, Maliki R, Abdou A, Mankara AK, Harouna AN, Cook C, Hinterwirth A, Worden L, Zhong L, Chen C et al..  2021.  Gut resistome of preschool children after prolonged mass azithromycin distribution: a cluster-randomized trial.. Clin Infect Dis.
Brogdon JM, Sie A, N Dah C, Ouermi L, Coulibaly B, Lebas E, Zhong L, Chen C, Lietman TM, Keenan JD et al..  2021.  Poultry Ownership and Genetic Antibiotic Resistance Determinants in the Gut of Preschool Children.. Am J Trop Med Hyg.
2020
Lalitha P, N Prajna V, Sikha M, Gunasekaran R, Hinterwirth A, Worden L, Chen C, Zhong L, Liu Z, Lietman TM et al..  2020.  Evaluation of Metagenomic Deep Sequencing as a Diagnostic Test for Infectious Keratitis.. Ophthalmology.
Oldenburg CE, Hinterwirth A, Sie A, Coulibaly B, Ouermi L, Dah C, Tapsoba C, Cummings SL, Zhong L, Chen C et al..  2020.  Gut Resistome After Oral Antibiotics in Preschool Children in Burkina Faso: A Randomized, Controlled Trial.. Clin Infect Dis. 70(3):525-527.
Oldenburg CE, Hinterwirth A, Worden L, Sie A, Dah C, Ouermi L, Coulibaly B, Zhong L, Chen C, Ruder K et al..  2020.  Indirect effect of oral azithromycin on the gut resistome of untreated children: a randomized controlled trial.. Int Health.
Doan T, Worden L, Hinterwirth A, Arzika AM, Maliki R, Abdou A, Zhong L, Chen C, Cook C, Lebas E et al..  2020.  Macrolide and Nonmacrolide Resistance with Mass Azithromycin Distribution.. N Engl J Med. 383(20):1941-1950.
Doan T, Hinterwirth A, Worden L, Arzika AM, Maliki R, Chen C, Zhong L, Zhou Z, Acharya NR, Porco TC et al..  2020.  Post-antibiotic Ocular Surface Microbiome in Children: A Cluster-Randomized Trial.. Ophthalmology. 127(8):1127-1130.
Hinterwirth A, Sie A, Coulibaly B, Ouermi L, Dah C, Tapsoba C, Zhong L, Chen C, Lietman TM, Keenan JD et al..  2020.  Rapid Reduction of Species in the Gut Microbiome of Preschool Children after Oral Azithromycin: A Randomized Controlled Trial.. Am J Trop Med Hyg. 103(3):1266-1269.
Doan T, Hinterwirth A, Arzika AM, Worden L, Chen C, Zhong L, Oldenburg CE, Keenan JD, Lietman TM.  2020.  Reduction of Coronavirus Burden With Mass Azithromycin Distribution.. Clin Infect Dis. 71(16):2282-2284.
2019
Gonzales JA, Hinterwirth A, Shantha J, Wang K, Zhong L, Cummings SL, Qian Y, Wilson MR, Acharya NR, Doan T.  2019.  Association of Ocular Inflammation and Rubella Virus Persistence.. JAMA Ophthalmol. 137(4):435-438.
Gomez CA, Sahoo MK, Kahn GYasmeen, Zhong L, Montoya JG, Pinsky BA, Doan T.  2019.  Dual-target, real-time PCR for the diagnosis of intraocular infections.. Br J Ophthalmol. 103(4):569-572.
Ray KJ, Cotter SY, Arzika AM, Kim J, Boubacar N, Zhou Z, Zhong L, Porco TC, Keenan JD, Lietman TM et al..  2019.  High-throughput sequencing of pooled samples to determine community-level microbiome diversity.. Ann Epidemiol. 39:63-68.
Oldenburg CE, Sie A, Coulibaly B, Ouermi L, Dah C, Tapsoba C, Bärnighausen T, Lebas E, Arzika AM, Cummings S et al..  2019.  Indirect Effect of Azithromycin Use on the Intestinal Microbiome Diversity of Untreated Children: A Randomized Trial.. Open Forum Infect Dis. 6(3):ofz061.
Doan T, Arzika AM, Hinterwirth A, Maliki R, Zhong L, Cummings S, Sarkar S, Chen C, Porco TC, Keenan JD et al..  2019.  Macrolide Resistance in MORDOR I - A Cluster-Randomized Trial in Niger.. N Engl J Med. 380(23):2271-2273.
Seitzman GD, Hinterwirth A, Zhong L, Cummings S, Chen C, Driver TH, Lee MD, Doan T.  2019.  Metagenomic Deep Sequencing for the Diagnosis of Corneal and External Disease Infections.. Ophthalmology. 126(12):1724-1726.
Lalitha P, Seitzman GD, Kotecha R, Hinterwirth A, Chen C, Zhong L, Cummings S, Lebas E, Sahoo MK, Pinsky BA et al..  2019.  Unbiased Pathogen Detection and Host Gene Profiling for Conjunctivitis.. Ophthalmology. 126(8):1090-1094.
2018
Oldenburg CE, Sie A, Coulibaly B, Ouermi L, Dah C, Tapsoba C, Bärnighausen T, Ray KJ, Zhong L, Cummings S et al..  2018.  Effect of Commonly Used Pediatric Antibiotics on Gut Microbial Diversity in Preschool Children in Burkina Faso: A Randomized Clinical Trial.. Open Forum Infect Dis. 5(11):ofy289.
Doan T, Hinterwirth A, Arzika AM, Cotter SY, Ray KJ, O'Brien KS, Zhong L, Chow ED, Zhou Z, Cummings SL et al..  2018.  Mass Azithromycin Distribution and Community Microbiome: A Cluster-Randomized Trial.. Open Forum Infect Dis. 5(8):ofy182.
2017
Doan T, Arzika AM, Ray KJ, Cotter SY, Kim J, Maliki R, Zhong L, Zhou Z, Porco TC, Vanderschelden B et al..  2017.  Gut Microbial Diversity in Antibiotic-Naive Children After Systemic Antibiotic Exposure: A Randomized Controlled Trial.. Clin Infect Dis. 64(9):1147-1153.
Doan T, Acharya NR, Pinsky BA, Sahoo MK, Chow ED, Banaei N, Budvytiene I, Cevallos V, Zhong L, Zhou Z et al..  2017.  Metagenomic DNA Sequencing for the Diagnosis of Intraocular Infections.. Ophthalmology. 124(8):1247-1248.